Preview

Proceedings of the National Academy of Sciences of Belarus, Medical series

Advanced search

Analysis of the genetic structure of Acinetobacter baumannii isolates, isolated from patients of the surgery and resuscitation departments of medical institutions in different regions of the Republic of Belarus

https://doi.org/10.29235/1814-6023-2025-22-1-7-16

Abstract

 A. baumannii bacteria are gram-negative, catalase-positive, oxidase-negative, non-fermenting coccobacilli that cause a wide range of local and systemic purulent-inflammatory processes. Genetic variants of bacteria that are highly resistant to antibiotics and cause healthcare-associated infections have acquired the greatest clinical significance. Multidrugresistant bacteria are widespread in medical institutions in different countries and pose a significant public health problem.

We studied 53 isolates of A. baumannii isolated from patients in intensive care wards and surgical departments. Molecular genetic methods – multilocus sequencing-typing and real-time PCR – established the spectrum of sequence types (ST) and clonal complexes (CC), as well as carriers of extended type beta-lactamase resistance genes, metallo-beta-lactamases and serine carbapenemase.

The isolates studied by the MLST method belonged to 4 clonal complexes: CC109, CC92, CC944 and CC110. The genetic structure of the dominant CC109 is represented by the following sequence types – ST2550, ST231, ST441. CC92 united ST168, ST450 and ST195. The minor CCs included CC944 and CC110.

The phylogenetic analysis has established that the ancestral ST of cluster I is ST229, evolving to form sequence types ST195, ST450, as well as ST2563 and ST1103. Cluster 2 is formed on the basis of ST2182 evolving with the formation of two branches ST2564 and ST441.

The analysis of the relationships between STs and CCs depending on the region of the country showed that isolates related to ST2550 (CC109) are more common in the Gomel, Mogilev, Minsk and Grodno regions, and ST231 (CC109) isolates are more common in the Vitebsk, Grodno and Mogilev regions.

About the Authors

O. O. Yanovich
Republican Scientific and Practical Center for Epidemiology and Microbiology
Belarus

Olga O. Yanovich ‒ Ph. D. (Biol.), Head of the Laboratory

23, Filimonov Str., 220114, Minsk



L. P. Titov
Республиканский научно-практический центр эпидемиологии и микробиологииИ
Belarus

Leonid P. Titov ‒ Academician, D. Sc. (Med.), Professor

 



References

1. Baumann P. Isolation of Acinetobacter from soil and water. Journal of Bacteriology, 1968, vol. 96, no. 1, pp. 39–42. https://doi.org/10.1128/jb.96.1.39-42.1968

2. Howard A., O’Donoghue M., Feeney A., Sleator R. D. Acinetobacter baumannii: an emerging opportunistic pathogen. Virulence, 2012, vol. 3, no. 3, pp. 243–250. https://doi.org/10.4161/viru.19700

3. Nguyen M., Joshi S. G. Carbapenem resistance in Acinetobacter baumannii, and their importance in hospital-acquired infections: a scientific review. Journal of Applied Microbiology, 2021, vol. 131, no. 6, pp. 2715–2738. https://doi:10.1111/jam.15130

4. Zhen X., Lundborg C. S., Sun X., Hu X., Dong H. Economic burden of antibiotic resistance in ESKPE organisms: A systematic review. Antimicrobial Resistance and Infection Control, 2019, vol. 8, art. 137. https://doi.org/10.1186/s13756-019-0590-7

5. Wong D., Nielsen T. B., Bonomo R. A., Pantapalangkoor P., Luna B., Spellberg B. Clinical and pathophysiologicl overview Acinetobacter infections: a century of challenges. Clinical Microbiology Reviews, 2017, vol. 30, no. 1, pp. 409–417. https://doi.org/10.1128/CMR.00058-16

6. Shelenkov A., Mikhaylova Y., Petrova L., Gaidukova I., Zamyatin M., Akimkin V. Genomic characterization of clinical Acinetobacter baumannii isolates obtained from COVID-1 patients in Russia. Antibiotics, 2022, vol. 11, no. 3, art. 346. https://doi.org/10.3390/antibiotics11030346

7. Sukhorukova M. V., Eidel’shtein M. V., Skleenova E. Yu., Ivanchik N. V., Shek E. A., Dekhnich A. V. [et al.]. Antimicrobial resistance of nosocomial Acinetobacter spp. isolates in Russia: results of multicenter epidemiological study “MARATHON” 2013–2014. Klinicheskaya mikrobiologiya i antimikrobnaya khimioterapiya [Clinical microbiology and antimicrobial chemotherapy], 2017, vol. 19, no. 1, pp. 42–48 (in Russian).

8. Titov L. P., Gorbunov V. A., Kharkhal’ A. N., Yanovich O. O., Levshina N. N., Blyga E. G., Sudak S. Yu., Bukhantsova A. N., Bonda N. V., Tkach L. M., Voitik S. B., Botina T. N. Character of wound microflora and resistance to antibiotics: monitoring results 2012–2020. Vestsi Natsyyanal’nai akademii navuk Belarusi. Serуya medуtsynskikh navuk = Proceedings of the National Academy of Sciences of Belarus. Medical series, 2023, vol. 20, no. 1, pp. 58–70 (in Russian).

9. Titov L. P., Gorbunov V. A., Kharkhal’ A. N., Davydov A. V., Levshina N. N. Trends in invasive bacterial diseases pathogens resistance to antibiotics: microbiologic monitoring, 2012‒2017. Zdravookhranenie [Healthcare], 2019, no. 7, pp. 5–16 (in Russian).

10. Maiden M. C., Jansen van Rensburg M. J., Bray J. E., Earle S. G., Ford S. A., Jolley K. A., McCarthy N. D. MLST revisited: the gene-by-gene approach to bacterial genomics. Nature Reviews Microbiology, 2013, vol. 11, no. 11, pp. 728–736. https://doi.org/10.1038/nrmicro3093

11. Larsen M. V., Cosentino S., Rasmussen S., Friis C., Hasman H., Marvig R. L., Jelsbak L., Sicheritz-Pontén T., Ussery D. W., Aarestrup F. M., Lund O. Multilocus sequence typing of total-genome-sequenced bacteria. Journal of Clinical Microbiology, 2012, vol. 50, no. 4, pp. 1355–1361. http://dx.doi.org/10.1128/JCM.06094-11

12. Fedotova O. S., Zakharova Yu. A., Ostapchuk A. V., Bazhanova U. A., Zakharov A. A. Phenotypic profile of priority multiresistant Аcinetobacter baumannii sequence types (ST1167, ST944, ST208). Zhurnal mikrobiologii, epidemiologii i immunobiologii [Journal of microbiology, epidemiology and immunobiology], 2021, vol. 98, pp. 639–647 (in Russian).

13. Sadeeva Z. Z., Novikova I. E., Alyab’eva N. M., Lazareva A. V., Komyagina T. M., Karaseva O. V., Vershinina M. G., Fisenko A. P. Acinetobacter baumannii in blood-borne and central nervous system infections in intensive care unit children: molecular and genetic characteristics and clinical significance. Infektsiya i immunitet [Infection and immunity], 2023, vol. 13, no. 2, pp. 289–301 (in Russian).

14. Khrul’nova S. A., Fedorova A. V., Frolova I. N., Klyasova G. A. Genotyping by random amplified polymorphic DNA assay of Acinetobacter baumannii isolated from blood culture of patients with hematological malignancies. Epidemiologiya i vaktsinoprofilaktika [Epidemiology and vaccinal prevention], 2020, vol. 19, no. 4, pp. 38–47 (in Russian).

15. Zarrilli R., Casillo R., Di Popolo A., Tripodi M. F., Bagattini M., Cuccurullo S., Crivaro V., Ragone E., Mattei A., Gal dieri N., Triassi M., Utili R. Molecular epidemiology of a clonal outbreak of multidrug-resistant A. baumannii in a university hospital in Italy. Clinical Microbiology and Infection, 2007, vol. 13, no. 5, pp. 481–489. https://doi.org/10.1111/j.1469-0691.2006.01675.x

16. Zarrilli R., Pournaras S., Giannouli M., Tsakris A. Global evolution of multidrug-resistant A. baumannii clonal line ages. International Journal of Antimicrobial Agents, 2023, vol. 41, no. 1, pp. 11–19. https://doi.org/10.1016/j.ijantimicag.2012.09.008

17. Diancourt L., Passet V., Nemec A., Dijkshoorn L., Brisse S. The population structure of A. baumannii: expanding multuresistant clones from an ancestral susceptible genetic pool. PloS One, 2010, vol. 5, no. 4, pр. e10034. https://doi.org/10.1371/journal.pone.0010034

18. Shek E. A., Sukhorukova M. V., Eidel’shtein M. V., Skleenova E. Yu., Ivanchik N. V., Shaidullina E. R. [et al.]. Antimicrobial resistance, carbapenemase production, and genotypes of nosocomial Acinetobacter spp. isolates in Russia: results of multicenter epidemiological study «MARATHON 2015–2016». Klinicheskaya mikrobiologiya i antimikrobnaya khimioterapiya [Clinical microbiology and antimicrobial chemotherapy], 2019, vol. 21, no. 2, pp. 171–180 (in Russian).

19. Bartual S. G., Seifert H., Hippler C., Luzon M. A., Wisplinghoff H., Rodríguez-Valera F. Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. Journal of Clinical Microbiology, 2005, vol. 43, no. 9, pp. 4382–4390. https://doi.org/10.1128/JCM.43.9.4382-4390.2005

20. Nascimento M., Sousa A., Ramirez M., Francisco A. P., Carriço J. A., Vaz C. PHYLOViZ 2.0: providing scalable data integration and vizualization from multiple phylogenetic interference methods. Bioinformatics, 2017, vol. 33, no. 1, pp. 128–129. https://doi.org/10.1093/bioinformatics/btw582

21. Giamarellou H., Antoniadou A., Kanellakopoulou K. Acinetobacter baumannii: a universal threat to public health? International Journal of Antimicrobial Agents, 2008, vol. 32, no. 2, pp. 106–119. https://doi.org/10.1016/j.ijantimicag. 2008.02.013

22. Harding C. M., Hennon S. W., Feldman M. F. Uncovering the mechanisms of A. baumannii virulence. Nature Reviews Microbiology, 2017, vol. 16, no. 2, pp. 91–102. https://doi.org/10.1038/nrmicro.2017.148

23. Pogue J. M., Mann T., Barber K. E., Kaye K. S. Carbapenem-resistant Acinetobacter baumannii: epidemiology, surveiliance and management. Expert Review of Anti-infective Therapy, 2014, vol. 11, no. 4, pp. 383–393. https://doi.org/10.1586/eri.13.14

24. Dijkshoorn L., Nemec A., Seifert H. An increasing threat in hospitals: multidrug-resistant A. baumannii. Nature Reviews Microbiology, 2007, vol. 5, no. 12, pp. 939–951. https://doi.org/10.1038/nrmicro1789

25. Blair J. M. A., Webber M. A., Baylay A. J., Ogbolu D. O., Piddock L. J. V. Molecular mechanisms of antibiotic resistance. Nature Reviews Microbiology, 2015, vol. 13, no. 1, pp. 42–51. https://doi.org/10.1038/nrmicro3380

26. Carretto E., Barbarini D., Dijkshoorn L., van der Reijden T. J., Brisse S., Passet V., Farina C. APSI Acinetobacter Study Group. Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study. Infection, Genetics and Evolution, 2011, vol. 11, no. 6, pp. 1319–1326. https://doi.org/10.1016/j.meegid.2011.04.024


Review

For citations:


Yanovich O.O., Titov L.P. Analysis of the genetic structure of Acinetobacter baumannii isolates, isolated from patients of the surgery and resuscitation departments of medical institutions in different regions of the Republic of Belarus. Proceedings of the National Academy of Sciences of Belarus, Medical series. 2025;22(1):7-16. (In Russ.) https://doi.org/10.29235/1814-6023-2025-22-1-7-16

Views: 149


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 1814-6023 (Print)
ISSN 2524-2350 (Online)